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bioDSC “improve my image analysis” consultation

Why?

Improve your image analysis in collaboration with the bioDSC.

What do we offer?

We offer concrete input on your image analysis problem. For example:

  • A short script with a working example
  • Suitable metrics to quantify your biological phenotypes
  • Recommendations for analysis software and approaches

As an indication, we aim to spend 1-2 afternoons to review your materials and then offer 1-2 hours of discussion. Further collaboration may be possible depending on mutual interest and feasibility.


ChatGPT imagining consultation.

How to join?

Send us an e-mail (info@biodsc.nl) including:

  • A short summary of the broader project and research question (±1-3 sentences)
  • A brief description of what you aim to achieve with your images (±1-5 sentences)
  • An example image (required if you have one, otherwise describe what you’ll do)
  • If applicable, your current analysis approach (e.g. nothing, manual segmentation, basic script available)

Example questions:

  • What’s the best way to extract a specific parameter from an image?
  • I’m currently manually annotating/segmenting data, can it be automated?
  • I want to analyze microscopy images—what tools should I use?
  • How can I best plot / visualize my data?
  • Can I save time by automating parts of my analysis?
  • Could you review my current analysis approach/script?
  • How can I design my pilot experiment to be suitable for image analysis?

Who?

PhDs, Postdocs, PIs, everyone with image analysis challenges can contact us.

And then?

We will study your problem and schedule an appointment to offer our input asap.

 
 

an initiative of the University of Amsterdam